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Atelier activetigger

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This commit is contained in:
Cédric COURALET 2024-02-29 15:45:58 +01:00
parent b0b7a84bef
commit ff0d636141
6 changed files with 186 additions and 3 deletions
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28
docker-images-datalab/activetigger/Dockerfile.rocker Normal file
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# Base
FROM rocker/shiny
# Copy requirements
COPY requirements.py /
COPY requirements.r /
# Install system dependencies
RUN apt-get update && \
apt-get install -y python3-pip libxml2-dev
## Install packages
RUN Rscript /requirements.r
RUN pip3 install -r /requirements.py
## Packages
#RUN python -m spacy download fr_core_news_sm \
#WORKDIR ~
#RUN wget https://dl.fbaipublicfiles.com/fasttext/vectors-crawl/cc.fr.300.bin.gz \
# && gunzip cc.fr.300.bin.gz
COPY activetigger ./activetigger
# Expose the default Shiny port
EXPOSE 3838
# Command to run the Shiny app
CMD ["R", "-e", "shiny::runApp('activetigger', port=3838, host='0.0.0.0')"]

13
docker-images-datalab/activetigger/requirements.py Normal file
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argparse
datasets
fasttext
numpy
pandas
pyarrow
scikit-learn
torch
transformers[torch]
sentence_transformers
typing-inspect==0.8.0
typing_extensions==4.6.1
spacy

4
docker-images-datalab/activetigger/requirements.r
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install.packages(c("arrow", "class", "data.table", "DT", "foreign", "glmnet", "haven", "LiblineaR", "Matrix", "Metrics", "quanteda", "quanteda.textmodels", "ranger", "readODS", "readxl", "RJSONIO", "rlang", "Rtsne", "shiny", "SparseM", "stringi", "uwot"))
packages=c("arrow", "class", "data.table", "DT", "foreign", "glmnet", "haven", "LiblineaR", "Matrix", "Metrics", "quanteda", "quanteda.textmodels", "ranger", "readODS", "readxl", "RJSONIO", "rlang", "Rtsne", "shiny", "SparseM", "stringi", "uwot", "future","htmlTable","ggplot2")
install.packages(setdiff(packages, rownames(installed.packages())))

140
helm-charts-datalab/helm-charts-test/charts/activetigger/template Normal file
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---
# Source: activetigger/templates/serviceaccount.yaml
apiVersion: v1
kind: ServiceAccount
metadata:
name: release-name-activetigger
labels:
helm.sh/chart: activetigger-0.1.0
app.kubernetes.io/name: activetigger
app.kubernetes.io/instance: release-name
app.kubernetes.io/version: "1.0.0"
app.kubernetes.io/managed-by: Helm
automountServiceAccountToken: true
---
# Source: activetigger/templates/service.yaml
apiVersion: v1
kind: Service
metadata:
name: release-name-activetigger
labels:
helm.sh/chart: activetigger-0.1.0
app.kubernetes.io/name: activetigger
app.kubernetes.io/instance: release-name
app.kubernetes.io/version: "1.0.0"
app.kubernetes.io/managed-by: Helm
spec:
type: ClusterIP
ports:
- port: 8000
targetPort: http
protocol: TCP
name: http
selector:
app.kubernetes.io/name: activetigger
app.kubernetes.io/instance: release-name
---
# Source: activetigger/templates/deployment.yaml
apiVersion: apps/v1
kind: Deployment
metadata:
name: release-name-activetigger
labels:
helm.sh/chart: activetigger-0.1.0
app.kubernetes.io/name: activetigger
app.kubernetes.io/instance: release-name
app.kubernetes.io/version: "1.0.0"
app.kubernetes.io/managed-by: Helm
spec:
replicas: 1
selector:
matchLabels:
app.kubernetes.io/name: activetigger
app.kubernetes.io/instance: release-name
template:
metadata:
labels:
helm.sh/chart: activetigger-0.1.0
app.kubernetes.io/name: activetigger
app.kubernetes.io/instance: release-name
app.kubernetes.io/version: "1.0.0"
app.kubernetes.io/managed-by: Helm
spec:
serviceAccountName: release-name-activetigger
securityContext:
{}
containers:
- name: activetigger
securityContext:
{}
image: "code.groupe-genes.fr/datalab/activetigger:latest"
imagePullPolicy: IfNotPresent
ports:
- name: http
containerPort: 8000
protocol: TCP
livenessProbe:
httpGet:
path: /
port: http
readinessProbe:
httpGet:
path: /
port: http
resources:
{}
---
# Source: activetigger/templates/ingress.yaml
apiVersion: networking.k8s.io/v1
kind: Ingress
metadata:
name: release-name-activetigger
labels:
helm.sh/chart: activetigger-0.1.0
app.kubernetes.io/name: activetigger
app.kubernetes.io/instance: release-name
app.kubernetes.io/version: "1.0.0"
app.kubernetes.io/managed-by: Helm
spec:
rules:
- host: "activetigger.lab.groupe-genes.fr"
http:
paths:
- path: /
pathType: ImplementationSpecific
backend:
service:
name: release-name-activetigger
port:
number: 8000
- host: "activetigger2.lab.groupe-genes.fr"
http:
paths:
- path: /
pathType: ImplementationSpecific
backend:
service:
name: release-name-activetigger
port:
number: 8000
---
# Source: activetigger/templates/tests/test-connection.yaml
apiVersion: v1
kind: Pod
metadata:
name: "release-name-activetigger-test-connection"
labels:
helm.sh/chart: activetigger-0.1.0
app.kubernetes.io/name: activetigger
app.kubernetes.io/instance: release-name
app.kubernetes.io/version: "1.0.0"
app.kubernetes.io/managed-by: Helm
annotations:
"helm.sh/hook": test
spec:
containers:
- name: wget
image: busybox
command: ['wget']
args: ['release-name-activetigger:8000']
restartPolicy: Never

2
helm-charts-datalab/helm-charts-test/charts/activetigger/values.yaml
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replicaCount: 1
image:
repository: https://code.groupe-genes.fr/dsit/datalab/src/branch/main/docker-images-datalab/activetigger
repository: code.groupe-genes.fr/datalab/activetigger:latest
pullPolicy: IfNotPresent
# Overrides the image tag whose default is the chart appVersion.
tag: "latest"